Publications
Alshalalfa, M., Verhaegh, G. W., Gibb, E. A., Yousefi, K., Lam, L., Kolisnik, T., et al. (2017). Low PCA3 expression is a marker of poor differentiation in localized prostate tumors: exploratory analysis from 12,076 patients. Oncotarget, 8(31), 50804–50813. https://doi.org/10.18632/oncotarget.15133
Cooperberg M.R., Erho N., Chan J.M., Feng F.Y., Cowan J.E., Kolisnik T., et al. The diverse genomic landscape of low-risk prostate cancer. Journal of Clinical Oncology. 2017 Feb 20;35:72-72.
Cormier, N., Kolisnik, T., Bieda, M. Reusable, extensible, and modifiable R scripts and Kepler workflows for comprehensive single set ChIP-seq analysis. (2016). BMC Bioinformatics, 17(1), 270. doi:10.1186/s12859-016-1125-3.
Nguyen, P. L., Martin, N. E., Choeurng, V., Palmer-Aronsten, B., Kolisnik, T., Beard, C. J., Feng, F. Y. et al. Utilization of biopsy-based genomic classifier to predict distant metastasis after definitive radiation and short-course ADT for intermediate and high-risk prostate cancer. Nature: Prostate Cancer and Prostatic Diseases, (October 2016), 1-7. doi:10.1038/pcan.2016.58.
Nguyen PL, Martin NE, Palmer-Aronsten BJ, Choeurng V, Kolisnik T, Beard CJ, et al. The Use of a Biopsy-Based Genomic Classifier to Predict the Risk of Distant Metastasis After Definitive Radiation and Short-Course Androgen Deprivation Therapy for Intermediate- and High-Risk Prostate Cancer. International Journal of Radiation Oncology. 96(2):S113-4.
Nguyen, P. L., Haddad, Z., Ross, A. E., Martin, N. E., Deheshi, S., Kolisnik, T., Catto, J., et al. (2017). Ability of a Genomic Classifier to Predict Metastasis and Prostate Cancer-specific Mortality after Radiation or Surgery based on Needle Biopsy Specimens. Journal of European Urology, 1-8. https://doi.org/10.1016/j.eururo.2017.05.009.
R. Leigh, M. M. Mostafa, T. Kolisnik, R. Newton, et al. An inhaled dose of budesonide induces genes involved in transcription and signaling in the human airways: enhancement of anti- and proinflammatory effector genes. Pharmacology Research Perspectives, 4(4), 2016, e00243. doi: 10.1002/prp2.243.
T. McPhillips, T. Song, T. Kolisnik, et al. YesWorkflow: A User-Oriented, Language-Independent Tool for Recovering Workflow Information from Scripts. International Journal of Digital Curation (IJDC), 10(1):298-313, 2015. doi:10.2218/ijdc.v10i1.370.
Y. Skovpen, C. Loreth, T. Kolisnik, et al. Aggregation and Integration of UK Biobank Phenotype Data for Downstream Analysis. Poster presented at BioIT World. 2019. http://projectessence.com/Start/biosciences/2019/02/22/takeda/.